Tokyo-born schoolboy Yukitaka Tsutsui is moving to Yamagata Prefecture for high school on a baseball scholarship. Since he went to the top middle school in Japan for baseball, the townsfolk are very excited about his arrival. However, when he arrives in his apartment, he encounters a strange man nonchalantly reading and wearing his clothes! The stranger claims to be an alien who crash-landed on Earth and has nowhere to go. Revealing himself to be Baka Ki El Dogra, the crown prince of the planet Dogra, he is just one of the hundreds of aliens that have already made Earth their home. Despite his regal origins, the prince is an infamous intergalactic fool who thinks nothing of inconveniencing others for his own amusement. Whether he is running ridiculous tests on his subordinates, giving strange powers to random children, or just generally being a nuisance, nobody is safe from the idiot prince's antics!

Hino Akiharu lost his parents when he was small and was adopted into his uncle's family. He didn't want to be a burden on his uncle's family and decides to enter a free boarding school as a butler, Hakureiryou high school. However, his delinquent boy-like appearance frightens the girls, who make up the majority of the students. Unable to get along with the classmates, Akiharu meets his childhood crush Saikyou Tomomi.

In the year 2010 AD, Hyper Hurricanes born concurrently all over the world caused severe damage. Five billion people lost their lives, decreasing the world's population to 3 billion. Existing economies and military were wiped out. Countries were frozen under solid ice, plains sank beneath seas, the world was changed dramatically. Human civilization enters a chaotic era. Poverty flourished outside of these economic zones and slums were widespread. The ruling class called themselves Logos and maintained their position by force of arms. They call the poor Revenus, who are exiled to live outside the special economic areas. Time has passed since then. Katsuragi Jo and Tsurasawa Jin, escape from Phantom, a force organized to watch Revenus and to suppress renegade elements of the Logos, taking with them a mysterious girl, Nobuto Sana. There are many who are interested in her, all with their own reasons.

Not long after putting the previous supernatural incident behind them, the members of Yamaboshi Academy's Student Cultural Society (StuCS) must deal with Fuusenkazura's newest trial—emotion transmission. This phenomenon allows the club members to hear each others' true thoughts, but with one catch: the timing, sender, and recipient are all completely random. To make matters worse, the club's supervisor, Ryuuzen Gotou, may have to step down due to his responsibilities for the upcoming school year. With emotions running high and Valentine's Day around the corner, the seemingly close bonds of the StuCS will be tested when their true feelings for each other are laid bare.