Three years since the return of the legendary Space Battleship Yamato, Earth has begun rebuilding itself and has made peace with the Gamilans. However, this recovery comes at the cost of utilizing the forbidden Wave Motion technology. Meanwhile, the notorious former crew members of the Yamato, who have each gone their separate ways, receive a psychic message from the mysterious Goddess Teresa. She urges them to return to their beloved ship and travel to the distant planet Terezart. They are promised a revolutionary power to combat the unprecedented threat of the relentless Gatlantis Empire, who are approaching Earth with all but innocent intentions. Unable to resist her plea, the crew reassembles and sets sail on another perilous intergalactic voyage, one that will test their sheer courage and versatility in the face of an even greater foe.

Ever since her crush rejected her by insulting her appearance, Sunako Nakahara has been a shut-in with a hatred for beauty, embracing all things morbid and occult-related. She is sent to live in her aunt's mansion which, to her dismay, she'll share with four exceedingly handsome boys her age. Furthermore, her flighty aunt has made a deal with these boys that in exchange for living there rent-free, they are to turn Sunako into a proper lady by the time she returns from a trip around the world. Thus begins Sunako's hectic life with abrasive Kyohei Takano, ladies' man Ranmaru Morii, calm Takenaga Oda, and friendly Yukinojo Toyama. As she interacts with them she finds them less obnoxious, and she may not be as much of an outcast as she thought. [Written by MAL Rewrite]

Corruption looms over the prosperous Russell City, where manifestations of negative emotions called Horrors cause chaos and mayhem. The Makai Order is the last bastion of hope against these unholy creatures. Using several small businesses as fronts, they deploy powerful Makai Knights and magical Makai Alchemists to combat the Horror threat. Within this secretive order, the highest rank of Golden Knight has been bestowed upon a large, powerful man named Sword, granting him use of the Garo armor and blade. He alone knows of a plot that threatens the entire Makai Order, with his only hint being the phrase “El Dorado." While fighting a Horror, he encounters Sophia "Sophie" Hennis, a teenage girl whose brother's disappearance years ago is also linked to the same phrase. The two agree to work together to uncover the truth behind "El Dorado" and the disappearance of Sophie's brother. [Written by MAL Rewrite]

Brought up in a conflict-ridden environment, child soldier Jonathan "Jonah" Mar hates weapons and those who deal them. But when Koko Hekmatyar, an international arms dealer, takes on Jonah as one of her bodyguards, he has little choice but to take up arms. Along with Koko's other bodyguards, composed mostly of former special-ops soldiers, Jonah is now tasked with protecting Koko and her overly idealistic goal of world peace from the countless dangers that come from her line of work. Jormungand follows Koko, Jonah, and the rest of crew as they travel the world selling weapons under the international shipping company HCLI. As Koko's work is illegal under international law, she is forced to constantly sidestep both local and international authorities while doing business with armies, private militaries, and militias. With the CIA always hot on her trail, and assassins around every corner, Jonah and the crew must guard Koko and her dream of world peace with their lives or die trying. [Written by MAL Rewrite]